You will need to modify the page.ascx created by Artisteer. You can do this before you upload/install the skin - or if you have access to the server you can do it there.
Modify this
<div class="art-header">
<div class="art-header-png"></div>
<div class="art-header-jpeg"></div>
</div>
to something like this
<div class="art-header">
<div class="art-header-png"></div>
<div id="MyHeaderPane" runat="server"></div>
</div>
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